Acceleration of image filtering algorithms for 3D visualization of murine lungs using dataflow engines
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2015
Authors
Milanković, Ivan L.Peulić, Aleksandar
Ysasi, A.B.
Wagner, W.L.
Pabst, A.M.
Ackermann, M.
Houdek, J.
Föhst, S.
Mentzer, S.J.
Konerding, M.A.
Filipović, Nenad
Tsuda, A.
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Image filtering is one of the most common and important tasks in image processing applications. In this paper, image processing using a mean filtering algorithm combined with thresholding and binarization algorithms for the 3D visualization and analysis of murine lungs is explained. These algorithms are then mapped on the Maxler's MAX2336B Dataflow Engine (DFE) to significantly increase calculation speed. Several different DFE configurations were tested and each yielded different performance characteristics. Optimal algorithm calculation speed was up to 30 fold baseline calculation speed.
Source:
2015 IEEE 15th International Conference on Bioinformatics and Bioengineering, BIBE 2015, 2015Publisher:
- Institute of Electrical and Electronics Engineers Inc.
Funding / projects:
- Application of biomedical engineering for preclinical and clinical practice (RS-MESTD-Integrated and Interdisciplinary Research (IIR or III)-41007)
- Multiscale Methods and Their Applicatios in Nanomedicine (RS-MESTD-Basic Research (BR or ON)-174028)
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Geografski fakultetTY - CONF AU - Milanković, Ivan L. AU - Peulić, Aleksandar AU - Ysasi, A.B. AU - Wagner, W.L. AU - Pabst, A.M. AU - Ackermann, M. AU - Houdek, J. AU - Föhst, S. AU - Mentzer, S.J. AU - Konerding, M.A. AU - Filipović, Nenad AU - Tsuda, A. PY - 2015 UR - https://gery.gef.bg.ac.rs/handle/123456789/732 AB - Image filtering is one of the most common and important tasks in image processing applications. In this paper, image processing using a mean filtering algorithm combined with thresholding and binarization algorithms for the 3D visualization and analysis of murine lungs is explained. These algorithms are then mapped on the Maxler's MAX2336B Dataflow Engine (DFE) to significantly increase calculation speed. Several different DFE configurations were tested and each yielded different performance characteristics. Optimal algorithm calculation speed was up to 30 fold baseline calculation speed. PB - Institute of Electrical and Electronics Engineers Inc. C3 - 2015 IEEE 15th International Conference on Bioinformatics and Bioengineering, BIBE 2015 T1 - Acceleration of image filtering algorithms for 3D visualization of murine lungs using dataflow engines DO - 10.1109/BIBE.2015.7367663 UR - https://hdl.handle.net/21.15107/rcub_gery_732 ER -
@conference{ author = "Milanković, Ivan L. and Peulić, Aleksandar and Ysasi, A.B. and Wagner, W.L. and Pabst, A.M. and Ackermann, M. and Houdek, J. and Föhst, S. and Mentzer, S.J. and Konerding, M.A. and Filipović, Nenad and Tsuda, A.", year = "2015", abstract = "Image filtering is one of the most common and important tasks in image processing applications. In this paper, image processing using a mean filtering algorithm combined with thresholding and binarization algorithms for the 3D visualization and analysis of murine lungs is explained. These algorithms are then mapped on the Maxler's MAX2336B Dataflow Engine (DFE) to significantly increase calculation speed. Several different DFE configurations were tested and each yielded different performance characteristics. Optimal algorithm calculation speed was up to 30 fold baseline calculation speed.", publisher = "Institute of Electrical and Electronics Engineers Inc.", journal = "2015 IEEE 15th International Conference on Bioinformatics and Bioengineering, BIBE 2015", title = "Acceleration of image filtering algorithms for 3D visualization of murine lungs using dataflow engines", doi = "10.1109/BIBE.2015.7367663", url = "https://hdl.handle.net/21.15107/rcub_gery_732" }
Milanković, I. L., Peulić, A., Ysasi, A.B., Wagner, W.L., Pabst, A.M., Ackermann, M., Houdek, J., Föhst, S., Mentzer, S.J., Konerding, M.A., Filipović, N.,& Tsuda, A.. (2015). Acceleration of image filtering algorithms for 3D visualization of murine lungs using dataflow engines. in 2015 IEEE 15th International Conference on Bioinformatics and Bioengineering, BIBE 2015 Institute of Electrical and Electronics Engineers Inc... https://doi.org/10.1109/BIBE.2015.7367663 https://hdl.handle.net/21.15107/rcub_gery_732
Milanković IL, Peulić A, Ysasi A, Wagner W, Pabst A, Ackermann M, Houdek J, Föhst S, Mentzer S, Konerding M, Filipović N, Tsuda A. Acceleration of image filtering algorithms for 3D visualization of murine lungs using dataflow engines. in 2015 IEEE 15th International Conference on Bioinformatics and Bioengineering, BIBE 2015. 2015;. doi:10.1109/BIBE.2015.7367663 https://hdl.handle.net/21.15107/rcub_gery_732 .
Milanković, Ivan L., Peulić, Aleksandar, Ysasi, A.B., Wagner, W.L., Pabst, A.M., Ackermann, M., Houdek, J., Föhst, S., Mentzer, S.J., Konerding, M.A., Filipović, Nenad, Tsuda, A., "Acceleration of image filtering algorithms for 3D visualization of murine lungs using dataflow engines" in 2015 IEEE 15th International Conference on Bioinformatics and Bioengineering, BIBE 2015 (2015), https://doi.org/10.1109/BIBE.2015.7367663 ., https://hdl.handle.net/21.15107/rcub_gery_732 .